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January 10, 2008 :
Corrections for first and second printing have been posted.

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Written for: Advanced undergraduate and graduate students.

Links:

- USC Website
- Buy book
- CMB Website

Last Updated
(January 10, 2008)

Code

Chapter 2

Computational Example 2.3 markov1

Computational Example 2.3 rsite

Computational Example 2.3 flengthr

Chapter 3

Computational Example 3.5 rsite

Computational Example 3.6 expect4.ec

Computational Example 3.6 ncount4

Chapter 8

Exercise 9 r.star

Chapter 9

Computational Example 9.1 makepwm

Computational Example 9.1 calcscore

Computational Example 9.2 transmatp

Computational Example 9.3 simmotif

Computational Example 9.3 gata.motifs.score

Computational Example 9.3 simbg

Excercise 14 neighbor2

Chapter 10

Computational Example 10.1 seqdist

Chapter 13

Computational Example 13.3 drift

Appendix

Appendix A basecomp